Chapter 18 Session Information
This tutorial was run on the date specified below.
## [1] “2020-04-15”
The sessionInfo() at run time was:
## R version 3.6.1 (2019-07-05)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: CentOS Linux 7 (Core)
##
## Matrix products: default
## BLAS/LAPACK: /share/software/user/open/openblas/0.2.19/lib/libopenblasp-r0.2.19.so
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] grid parallel stats4 stats graphics grDevices utils
## [8] datasets methods base
##
## other attached packages:
## [1] circlize_0.4.8 ComplexHeatmap_2.2.0
## [3] gridExtra_2.3 pdftools_2.3
## [5] gtable_0.3.0 ggrastr_0.1.7
## [7] ArchR_0.9.1 magrittr_1.5
## [9] rhdf5_2.30.1 Matrix_1.2-17
## [11] data.table_1.12.8 SummarizedExperiment_1.16.1
## [13] DelayedArray_0.12.2 BiocParallel_1.20.1
## [15] matrixStats_0.56.0 Biobase_2.46.0
## [17] GenomicRanges_1.38.0 GenomeInfoDb_1.22.1
## [19] IRanges_2.20.2 S4Vectors_0.24.3
## [21] BiocGenerics_0.32.0 ggplot2_3.2.1
##
## loaded via a namespace (and not attached):
## [1] nlme_3.1-140 bitops_1.0-6
## [3] fs_1.3.1 usethis_1.5.1
## [5] devtools_2.2.1 RColorBrewer_1.1-2
## [7] rprojroot_1.3-2 tools_3.6.1
## [9] backports_1.1.6 R6_2.4.1
## [11] mgcv_1.8-28 lazyeval_0.2.2
## [13] colorspace_1.4-1 GetoptLong_0.1.8
## [15] withr_2.1.2 tidyselect_1.0.0
## [17] prettyunits_1.1.1 processx_3.4.1
## [19] curl_4.3 compiler_3.6.1
## [21] cli_2.0.1 Cairo_1.5-10
## [23] desc_1.2.0 labeling_0.3
## [25] rtracklayer_1.46.0 scales_1.1.0
## [27] hexbin_1.28.1 askpass_1.1
## [29] callr_3.4.1 nabor_0.5.0
## [31] stringr_1.4.0 digest_0.6.25
## [33] Rsamtools_2.2.3 rmarkdown_2.1
## [35] BSgenome.Hsapiens.UCSC.hg19_1.4.0 XVector_0.26.0
## [37] pkgconfig_2.0.3 htmltools_0.4.0
## [39] sessioninfo_1.1.1 BSgenome_1.54.0
## [41] rlang_0.4.5 GlobalOptions_0.1.1
## [43] farver_2.0.3 shape_1.4.4
## [45] gtools_3.8.2 dplyr_0.8.4
## [47] RCurl_1.98-1.1 GenomeInfoDbData_1.2.2
## [49] Rcpp_1.0.4 munsell_0.5.0
## [51] Rhdf5lib_1.8.0 fansi_0.4.1
## [53] lifecycle_0.1.0 stringi_1.4.6
## [55] yaml_2.2.1 zlibbioc_1.32.0
## [57] pkgbuild_1.0.6 ggrepel_0.8.1
## [59] crayon_1.3.4 lattice_0.20-38
## [61] splines_3.6.1 Biostrings_2.54.0
## [63] knitr_1.27 ps_1.3.2
## [65] pillar_1.4.3 rjson_0.2.20
## [67] codetools_0.2-16 pkgload_1.0.2
## [69] XML_3.99-0.3 glue_1.4.0
## [71] evaluate_0.14 qpdf_1.1
## [73] remotes_2.1.0 png_0.1-7
## [75] testthat_2.3.1 purrr_0.3.3
## [77] clue_0.3-57 assertthat_0.2.1
## [79] xfun_0.12 tibble_2.1.3
## [81] GenomicAlignments_1.22.1 memoise_1.1.0
## [83] cluster_2.1.0 ellipsis_0.3.0