Get peak annotation matches from an ArchRProject

This function gets peak annotation matches from a given ArchRProject. The peaks in the returned object are in the same order as the peaks returned by getPeakSet().

getMatches(ArchRProj = NULL, name = NULL, annoName = NULL)

Arguments

ArchRProj: An ArchRProject object.
name: The name of the peakAnnotation object (i.e. Motifs) to retrieve from the designated ArchRProject.
annoName: The name of a specific annotation to subset within the peakAnnotation.

Examples


# Get Test ArchR Project
proj <- getTestProject()

# Get Annotation Matches
matches <- getMatches(proj)