Get Valid Barcodes from 10x Cell Ranger output to pre-filter barcodes

This function will read in processed 10x cell ranger files and identify barcodes that are associated with a cell that passed QC.

getValidBarcodes(csvFiles = NULL, sampleNames = NULL)

Arguments

csvFiles

A character vector of names from 10x CSV files to be read in for identification of valid cell barcodes.

sampleNames

A character vector containing the sample names to be associated with each individual entry in csvFiles.