Get Relevant Data For ArchR Tutorials — getTutorialData • ArchR

This function will download data for a given tutorial and return the input files required for ArchR.

getTutorialData(tutorial = "hematopoiesis", threads = getArchRThreads())

Arguments

tutorial: The name of the available tutorial for which to retreive the tutorial data. The main option is "Hematopoiesis". "Hematopoiesis" is a small scATAC-seq dataset that spans the hematopoieitic hierarchy from stem cells to differentiated cells. This dataset is made up of cells from peripheral blood, bone marrow, and CD34+ sorted bone marrow. The second option is "Test" which is downloading a small test PBMC fragments file mainly used to test the url capabilities of this function.
threads: The number of threads to be used for parallel computing.


# Get Tutorial Fragments using `test` since its smaller
fragments <- getTutorialData(tutorial = "test")