Get summary for Groups in ArchRProject — getGroupSummary • ArchR

This function summarizes a numeric cellColData entry across groupings in a ArchRProject.

getGroupSummary(
  ArchRProj = NULL,
  groupBy = "Sample",
  select = "TSSEnrichment",
  summary = "median",
  removeNA = TRUE
)

Arguments

ArchRProj: An ArchRProject object.
groupBy: The name of the column in cellColData to use for grouping multiple cells together for summarizing information.
select: A character vector containing the column names to select from cellColData.
summary: A character vector describing which method for summarizing across group. Options include "median", "mean", or "sum".
removeNA: Remove NA's from summary method.

Examples


# Get Test ArchR Project
proj <- getTestProject()

# Get Group Summary
getGroupSummary(proj, groupBy = "Clusters", select = "TSSEnrichment", summary = "mean")