Get the peak co-accessibility from an ArchRProject

This function obtains co-accessibility data from an ArchRProject.

getCoAccessibility(
  ArchRProj = NULL,
  corCutOff = 0.5,
  resolution = 1,
  returnLoops = TRUE
)

Arguments

ArchRProj

An ArchRProject object.

corCutOff

A numeric describing the minimum numeric peak-to-peak correlation to return.

resolution

A numeric describing the bp resolution to use when returning loops. This helps with overplotting of correlated regions. This only takes affect if returnLoops = TRUE.

returnLoops

A boolean indicating to return the co-accessibility signal as a GRanges "loops" object designed for use with the ArchRBrowser() or as an ArchRBrowserTrack().

Examples

# Get Test ArchR Project
proj <- getTestProject()

# Add Co Accessibility
proj <- addCoAccessibility(proj, k = 20)

# Get Co Accessibility
CoA <- getCoAccessibility(proj)