Get the blacklist from an ArchRProject

This function gets the blacklist (the regions to be excluded from analysis) as a GRanges object from the genomeAnnotation of a given ArchRProject.

getBlacklist(ArchRProj = NULL)

Arguments

ArchRProj

An ArchRProject object.

Examples

# Get Test ArchR Project
proj <- getTestProject()

# Get Blacklist in ArchRProj
getBlacklist(proj)

# Get Blacklist loaded globally
getBlacklist()