Impute a matrix with impute weights

This function gets imputation weights from an ArchRProject to impute a numerical matrix

imputeMatrix(
  mat = NULL,
  imputeWeights = NULL,
  threads = getArchRThreads(),
  verbose = FALSE,
  logFile = createLogFile("imputeMatrix")
)

Arguments

mat

A matrix or sparseMatrix of class dgCMatrix to be imputed.

imputeWeights

An R object containing impute weights as returned by getImputeWeights(ArchRProj). See addImputeWeights() for more details.

threads

The number of threads to be used for parallel computing.

verbose

A boolean value indicating whether to use verbose output during execution of this function. Can be set to FALSE for a cleaner output.

logFile

The path to a file to be used for logging ArchR output.